SEQ03

SEQ03_seq_processing.html

2018-10-04 Thursday

Double check that regenotyped individuals have been removed from the sample population

make a list of regenotyped individuals from SEQ03 called regenos_from_SEQ03.csv using the cat_regenos.Rmd.

regenos_from_SEQ03.csv

Upload that list to the logs folder using the jupyter browser.
write a script to move those files from samples to samples/regenos - might already exist in 12-stacks_process_scripts/movesamples.sh - used a version of this to create the move_regenos.sh script

See SEQ05 redux for trim, map, snps

2018-10-03 Wednesday

finished process radtags, started trim, map and call SNPs with dDocent.
need to cat total raw snps into master file

Filtering seq03 from 10/29/15

SEQ03 stacks from 3/15/15

SEQ03 redux - re-running seq03 in fall 2018 using jupiter notebook. Testing workflow to see if runs can be run individually (or in groups of 576 samples) or if they need to be run together. Filtering must be done together.